IA7306 / SI06278 - Fundamentals of Computational Epidemiology
This class is part of the activities of the Epischisto Research Group http://www.epischisto.org with CESAR.edu and CPqAM/FIOCRUZ (http://www.cpqam.fiocruz.br/).
NEWS and Business
Classes
For undergratuate students (SI 06278): Class Schedule - Summary
BOOKS
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- ( ): Implementation of Game of Life with some modifications (states, rules, ...)
- : Implementation of Koch curve to calculate its perimeter and its similarity dimension.
- ( ): My first model of a disease
- ( ): Implementation of the Game of life with the ODEs of your model as rules in the callular automaton and solving the ODEs by Runge-Kutta!
- ( ): Implementation of my Model with solving the ODEs (MATHEMATICA or MATLAB)
- ( ): Projects using Latex (Latex how to install and TEMPLATES, etc...)
- ( ): Implementation with Automata and ODEs
- ( ): Model analysis and parameters analysis
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( ): My Full Project for a Journal ()
PROJECTS
CLASS SCHEDULE (4h/class)
- Class 1 - jul 20, 2015 - (Motivation, study of Game of Life): slides here
- Class 2 - jul 27, 2015 - (Homework and Introduction to Cellular Automata): Chapter I, Chapter II, Chapter III of The New Kind of Science, Stephen Wolfram, Wolfram Media, 2002)
- Class 3 - sep 03, 2015 - (self-replicanting Machines and Dimensions) Chapter 1 - Book A Discrete View of the World.
- Class 4 - sep 10, 2015 - (Introduction to Epidemiology: Chapters I and II, Chapter III, Chapters IV and V of Introdução à Epodemiologia, Naomar de Almeida Filho and Maria Zélia Rouquayrol, MEDSI, 4a. Ed)
- Class 5 sep 17, 2015 - (Projects, Latex, ShareLatex, Introduction to Epidemiology)
- Class 6 sep 24, 2015 - (IBMs, ABMs, My first model: Classical Epidemic Models and Papers in Modeling... like this one http://www.systema-journal.org/article/view/172 ;-) )
- Class 7, 8, 9, 10 and 11 oct 01, 08, 15, 22, 29 2015 for understand the Classical Epidemic Models, first READ the Chapter 1 and 2.
- Class 12, 13, 14 nov 05, 12, 19 2015 (IBMs, ABMs, My first model: Classical Epidemic Model). The first formalization by A. G. McKendrick and W. O. Kermack: http://www.math.utah.edu/~bkohler/Journalclub/kermack1927.pdf
- Class 15, 16, 17 nov 24, dec 03, 10 2015 The entropy of information, dimensions of singularity
- Class 18, 19 dec 17, 24 2015 Fundamentals of Cellular Automata
old ones...
- see the movie: http://pt.wikipedia.org/wiki/Cont%C3%A1gio_(filme)
- play the game: http://www.ndemiccreations.com/en/25-plague-inc-evolved
- Workshop to build some models!
- Class 7 - may 28, 2015 - Solving ODEs by Runge-Kutta (http://pt.wikipedia.org/wiki/M%C3%A9todo_de_Runge-Kutta)
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Class 8 - jun 4, 2015 - (Review of ODEs - ordinary differential equations) and solving them
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Class 9 - jun 11 , 2015 - Modeling and solving models
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Class 10 - jun 18 , 2015 - Testing SIR and ODEs methods, see
- a Mathematica SIR TEMPLATE GUIDE HERE,
- a Mathematica tutorial in portuguese,
- a SIR model solved by Runge Kutta,
- and Geometric Interpretation here)
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Class 11 - jun 25, 2015 - 4rd DELIVERY - Latex for dummies and OTHER Mathematica Examples
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Class 12 - jul 2, 2015 - 3rd DELIVERY
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Class 13 - jul 9, 2015 - Modeling and analysis -
(Scientific Methodology, and Scientific Modeling Analysis) - Class 14 - jul 16, 2015 - 4th DELIVERY
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Class 15 - jul 23, 2015 - Modeling and analysis
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Class 16 - Submission to a Journal